STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0250PFAM: histone deacetylase superfamily; KEGG: bsu:BSU29710 acetoin dehydrogenase. (387 aa)    
Predicted Functional Partners:
Tbis_2730
PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: mgm:Mmc1_2016 helicase domain protein.
   
 0.957
Tbis_1922
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4255 AAA ATPase, central region.
   
 0.773
Tbis_2403
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: met:M446_1988 ATPase central domain- containing protein.
   
 0.773
Tbis_3402
Hypothetical protein.
   
 0.773
Tbis_3136
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: bba:Bd3625 3-demethylubiquinone-9 3- methyltransferase.
    
 0.766
Tbis_2325
Ankyrin; KEGG: bph:Bphy_4177 ankyrin.
   
 0.744
Tbis_1934
Hypothetical protein.
    
  0.739
Tbis_2424
PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_1995 ThiJ/PfpI domain-containing protein.
   
  0.737
Tbis_1365
KEGG: ade:Adeh_3797 hypothetical protein.
    
 0.720
Tbis_1480
PFAM: pentapeptide repeat protein; WD-40 repeat protein; SMART: WD-40 repeat protein; Pyrrolo-quinoline quinone; AAA ATPase; KEGG: scl:sce3623 hypothetical protein.
    
 0.720
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.