STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0375PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Tbis_1172
SMART: helix-turn-helix domain protein.
     0.777
Tbis_1229
SMART: helix-turn-helix domain protein.
     0.777
Tbis_2479
SMART: helix-turn-helix domain protein.
     0.777
Tbis_1230
PFAM: protein of unknown function DUF397.
  
     0.766
Tbis_0234
SMART: helix-turn-helix domain protein.
  
     0.764
Tbis_0235
PFAM: protein of unknown function DUF397.
  
     0.759
Tbis_0303
PFAM: protein of unknown function DUF742.
  
     0.704
Tbis_1521
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pde:Pden_4917 transcriptional regulator, XRE family.
  
     0.678
Tbis_1756
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rle:RL2180 putative helix-turn-helix transcriptional regulatory protein.
  
     0.673
Tbis_2940
PFAM: protein of unknown function DUF742.
  
     0.632
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.