STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0416PFAM: MaoC domain protein dehydratase; KEGG: mmr:Mmar10_0309 MaoC-like dehydratase. (129 aa)    
Predicted Functional Partners:
Tbis_0517
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cti:RALTA_A1582 crotonobetainyl-CoA hydratase.
  
  0.926
Tbis_2090
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nar:Saro_1417 enoyl-CoA hydratase.
  
  0.926
Tbis_0415
PFAM: AMP-dependent synthetase and ligase; MaoC domain protein dehydratase; KEGG: rce:RC1_3527 acyl-CoA synthetase, putative.
       0.776
Tbis_0413
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_A2258 enoyl-CoA hydratase/carnithine racemase.
  
  0.768
Tbis_0414
PFAM: NHL repeat containing protein; KEGG: sfu:Sfum_2158 NHL repeat containing protein.
       0.746
Tbis_0236
PFAM: Catalase domain protein; KEGG: abo:ABO_1845 catalase; Belongs to the catalase family.
   
 0.619
Tbis_2268
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 0.546
Tbis_0422
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; KEGG: bcz:BCZK1748 hypothetical protein.
     
 0.480
Tbis_0412
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_0214 transcriptional regulator, TetR family.
       0.474
Tbis_0417
PFAM: Extracellular ligand-binding receptor; KEGG: bja:bll0887 ABC transporter substrate-binding protein.
       0.457
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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