STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0428PFAM: protein of unknown function DUF917; KEGG: mlo:mll9130 hypothetical protein. (362 aa)    
Predicted Functional Partners:
Tbis_0427
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mlo:mll9131 hydantoinase.
    0.994
Tbis_2949
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bha:BH1884 hydantoinase.
    0.977
Tbis_0426
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: scl:sce2618 putative cytosine permease.
     0.943
Tbis_0431
Putative transcriptional regulator, PucR family; KEGG: xcv:XCV4471 sugar diacid utilization regulator.
 
     0.833
Tbis_0430
PFAM: protein of unknown function DUF917; KEGG: scl:sce2619 hypothetical protein.
 
    
0.814
Tbis_0429
PFAM: protein of unknown function DUF917; KEGG: scl:sce2619 hypothetical protein.
 
    
0.792
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.