STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0514TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: gsu:GSU1280 cobalt ABC transporter, permease protein. (252 aa)    
Predicted Functional Partners:
Tbis_0512
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sus:Acid_6714 cobalamin (vitamin B12) biosynthesis CbiM protein.
 
 0.999
Tbis_0515
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 0.999
Tbis_3005
PFAM: BioY protein; KEGG: mxa:MXAN_2207 BioY family protein.
  
 
 0.931
Tbis_1602
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bcj:BCAS0451 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.911
Tbis_3307
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: scl:sce3461 oligopeptide ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.911
Tbis_2502
KEGG: pmy:Pmen_4570 precorrin-6y C5,15- methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15- methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Methyltransferase type 11; Methyltransferase type 12.
  
  
 0.716
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.662
Tbis_2496
TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bch:Bcen2424_1671 precorrin-3B C17- methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.656
Tbis_0513
Hypothetical protein.
       0.572
Tbis_3311
PFAM: extracellular solute-binding protein family 5; KEGG: asa:ASA_1879 ABC-type oligopeptide transporter, periplasmic binding protein.
 
  
 0.534
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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