STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0722KEGG: pzu:PHZ_c2063 nucleotidyltransferase family protein. (243 aa)    
Predicted Functional Partners:
Tbis_0723
PFAM: 3-dehydroquinate synthase; iron-containing alcohol dehydrogenase; KEGG: scl:sce5394 glycerol-1-phosphate dehydrogenase (NAD(P)(+)).
 
     0.938
Tbis_0637
PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; glycosyl transferase family 2; KEGG: bsu:BSU35720 CDP-glycerol:polyglycerol phosphate glycero-phosphotransferase.
 
  
 0.876
Tbis_0724
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nis:NIS_1256 hypothetical protein.
 
     0.828
Tbis_2975
PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bsu:BSU35720 CDP-glycerol:polyglycerol phosphate glycero-phosphotransferase.
 
  
 0.724
Tbis_0720
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gdj:Gdia_1376 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.686
Tbis_0721
Hypothetical protein.
       0.595
Tbis_0725
PFAM: glycosyl transferase family 2; KEGG: glycosyl transferase family 2.
 
     0.591
Tbis_1852
KEGG: rce:RC1_3887 quinoprotein glucose dehydrogenase.
  
     0.546
Tbis_3141
PFAM: sulfotransferase; KEGG: rsh:Rsph17029_4075 sulfotransferase.
 
     0.503
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
 
     0.493
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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