STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0762Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: mrd:Mrad2831_3585 MerR family transcriptional regulator. (110 aa)    
Predicted Functional Partners:
Tbis_2400
Hypothetical protein.
  
     0.677
Tbis_0750
KEGG: hypothetical protein LOC739882.
 
     0.662
Tbis_2547
Hypothetical protein.
  
    0.630
Tbis_0656
Hypothetical protein; KEGG: GK10816 gene product from transcript GK10816- RA.
  
     0.628
Tbis_3020
Hypothetical protein.
  
     0.604
Tbis_2537
PFAM: NERD domain protein; KEGG: sbp:Sbal223_2107 NERD domain protein.
  
     0.592
Tbis_0038
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: cak:Caul_4555 signal transduction histidine kinase.
  
    0.587
Tbis_0039
KEGG: gur:Gura_1221 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein.
 
 
 
 0.580
Tbis_1957
KEGG: scl:sce1864 hypothetical protein.
  
     0.566
Tbis_0080
Hypothetical protein.
 
 
 0.561
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.