STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0804PFAM: glycosyl transferase group 1; KEGG: bac:BamMC406_3700 glycosyl transferase group 1. (425 aa)    
Predicted Functional Partners:
Tbis_0805
PFAM: coagulation factor 5/8 type domain protein; KEGG: afw:Anae109_4471 tetratricopeptide TPR_4.
 
   
 0.872
Tbis_0806
Hypothetical protein.
 
     0.864
Tbis_0802
KEGG: bbr:BB2737 hypothetical protein.
 
     0.804
Tbis_0810
Hypothetical protein.
  
     0.736
Tbis_0809
PFAM: acyltransferase 3; KEGG: mxa:MXAN_3238 acyltransferase family protein.
 
    0.702
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.685
Tbis_0807
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ypm:YP_1007 biotin synthesis protein BioC.
 
     0.668
Tbis_0808
KEGG: Os05g0527000; hypothetical protein.
  
     0.623
Tbis_0747
Hypothetical protein.
  
    0.595
Tbis_2965
PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative.
    
 
 0.481
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.