STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0811PFAM: UbiA prenyltransferase; KEGG: pap:PSPA7_6246 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family. (308 aa)    
Predicted Functional Partners:
Tbis_0812
PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: noc:Noc_1951 FAD linked oxidase-like.
 
  
 0.971
Tbis_0813
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rsq:Rsph17025_3976 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.950
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 0.733
Tbis_0810
Hypothetical protein.
       0.672
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.578
Tbis_2489
PFAM: von Willebrand factor type A; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: von Willebrand factor type A; AAA ATPase; KEGG: rso:RS03742 chelatase protein.
  
  
 0.544
Tbis_2434
PFAM: FAD linked oxidase domain protein; KEGG: rfr:Rfer_0825 FAD linked oxidase-like.
    
 0.479
Tbis_0809
PFAM: acyltransferase 3; KEGG: mxa:MXAN_3238 acyltransferase family protein.
  
  
 0.470
Tbis_2165
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ade:Adeh_0810 hypothetical protein.
    
 0.458
Tbis_1137
PFAM: FAD linked oxidase domain protein; KEGG: ank:AnaeK_2952 FAD linked oxidase domain protein.
    
 0.432
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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