STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1037PFAM: Aldehyde Dehydrogenase; KEGG: mxa:MXAN_2844 putative succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (481 aa)    
Predicted Functional Partners:
Tbis_0365
PFAM: Aldehyde Dehydrogenase; KEGG: scl:sce5006 putative aldehyde dehydrogenase (NAD(+)).
 
     0.939
Tbis_1511
PFAM: Proline dehydrogenase; KEGG: mxa:MXAN_7405 proline dehydrogenase.
 
 
 0.859
Tbis_1036
PFAM: regulatory protein TetR; KEGG: pla:Plav_2655 TetR family transcriptional regulator.
       0.484
alc
Allantoicase; KEGG: scl:sce5877 putative bifunctional allantoicase/OHCU decarboxylase; TIGRFAM: allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family.
     
 0.439
Tbis_1570
PFAM: Na+/solute symporter; KEGG: bac:BamMC406_2256 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.413
Tbis_3076
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein.
  
  
 0.411
Tbis_0663
KEGG: aba:Acid345_2276 citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.404
Tbis_3075
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sus:Acid_1483 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
 
  
 0.401
Tbis_1458
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ade:Adeh_0817 glutamate synthase (NADH) large subunit.
  
  
 0.400
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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