STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1388PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2543 5,10- methylenetetrahydromethanopterin reductase. (344 aa)    
Predicted Functional Partners:
Tbis_0748
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; nitroreductase; KEGG: bpy:Bphyt_4255 F420-dependent oxidoreductase.
 
  
 0.792
Tbis_0749
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: swi:Swit_0414 LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.787
Tbis_2106
Hypothetical protein.
  
   
 0.773
Tbis_0846
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: cak:Caul_2456 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
  
     0.700
Tbis_0505
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: cak:Caul_2456 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
  
     0.697
Tbis_0746
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pzu:PHZ_c2536 hypothetical protein.
 
  
 0.651
fbiD
Protein of unknown function DUF121; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
 
   
 0.615
Tbis_1389
PFAM: peptidase M24; creatinase; KEGG: gur:Gura_1824 peptidase M24.
  
  
 0.557
Tbis_1387
PFAM: protein of unknown function DUF574; Methyltransferase type 12; KEGG: scl:sce6070 hypothetical protein.
       0.542
Tbis_1506
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: acr:Acry_0341 UbiA prenyltransferase.
  
     0.516
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.