STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1534TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: pmy:Pmen_3759 CRISPR-associated CSE2 family protein. (220 aa)    
Predicted Functional Partners:
Tbis_1535
TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: pmy:Pmen_3760 CRISPR-associated CSE1 family protein.
 
 0.999
Tbis_1533
TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: pmy:Pmen_3758 CRISPR-associated CSE4 family protein.
 
 
 0.998
Tbis_1531
TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: ppd:Ppro_2338 CRISPR-associated CSE3 family protein.
 
 
 0.997
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.967
Tbis_1536
KEGG: sfu:Sfum_2824 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase.
 
  
 0.966
Tbis_1529
TIGRFAM: CRISPR-associated protein Cas2; KEGG: gdj:Gdia_0421 CRISPR-associated protein Cas2.
 
   
 0.964
Tbis_1532
TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: pmy:Pmen_3757 CRISPR-associated Cas5e family protein.
 
     0.957
Tbis_3045
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rpt:Rpal_3044 putative phage repressor.
  
     0.520
Tbis_0125
Transcriptional regulator, XRE family; PFAM: Tetratricopeptide TPR_4; SMART: helix-turn-helix domain protein; KEGG: scl:sce3347 protein kinase.
  
     0.504
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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