STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1553KEGG: mch:Mchl_1356 urease, gamma subunit; TIGRFAM: urease, gamma subunit; urease, beta subunit; PFAM: Urease gamma subunit region; Urease beta subunit. (234 aa)    
Predicted Functional Partners:
ureC
Urease; PFAM: amidohydrolase; Urease alpha-subunit domain protein; Amidohydrolase 3; KEGG: aeh:Mlg_0184 urease subunit alpha.
 0.999
ureC-2
PFAM: Urease alpha-subunit domain protein; amidohydrolase; KEGG: aeh:Mlg_0184 urease subunit alpha.
 0.999
Tbis_2611
TIGRFAM: urease, gamma subunit; urease, beta subunit; PFAM: Urease gamma subunit region; Urease beta subunit; KEGG: mch:Mchl_1356 urease, gamma subunit.
 
0.999
Tbis_3219
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: rpc:RPC_4559 hydrogenase accessory protein HypB.
 
  
 0.970
alc
Allantoicase; KEGG: scl:sce5877 putative bifunctional allantoicase/OHCU decarboxylase; TIGRFAM: allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family.
    
  0.916
Tbis_1458
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ade:Adeh_0817 glutamate synthase (NADH) large subunit.
      
 0.749
Tbis_1549
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pap:PSPA7_3217 hypothetical protein.
     
 0.656
Tbis_1551
PFAM: Amidohydrolase 3; KEGG: bcj:BCAM1935 putative amidohydrolase.
       0.626
Tbis_1550
PFAM: amino acid permease-associated region; KEGG: ppw:PputW619_2573 amino acid permease- associated region.
     
 0.622
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
    0.592
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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