STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1565Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rpe:RPE_3230 transcriptional regulator, MarR family. (151 aa)    
Predicted Functional Partners:
Tbis_2346
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B0885 putative lyase.
  
    0.597
Tbis_1566
PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2411 putative transmembrane efflux protein.
       0.565
Tbis_2345
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cti:RALTA_B0884 putative transcriptional regulator, AraC family, isolated domain.
  
  
 0.488
Tbis_0386
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: afw:Anae109_1735 SARP family transcriptional regulator.
  
    0.447
Tbis_0361
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; TPR repeat- containing protein; Tetratricopeptide TPR_4; Bacterio- opsin activator HTH domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: regulatory protein LuxR; Tetratricopeptide domain protein; KEGG: rle:pRL120769 putative transcriptional regulator.
  
  
 0.407
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.