STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1584PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bsu:BSU14060 short chain dehydrogenase. (264 aa)    
Predicted Functional Partners:
Tbis_1582
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pag:PLES_50111 glycerate dehydrogenase.
 
 
 0.820
Tbis_1583
PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: bur:Bcep18194_C6721 hypothetical protein; Belongs to the TPP enzyme family.
 
 0.811
Tbis_1586
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bcb:BCB4264_A5464 acyl-CoA dehydrogenase.
 
  0.810
Tbis_1585
PFAM: CoA-binding domain protein; KEGG: mgm:Mmc1_1098 CoA-binding domain protein.
 
    0.808
Tbis_2372
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.662
Tbis_0964
PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: rce:RC1_3985 oxidoreductase, short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.640
Tbis_0140
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: bam:Bamb_4089 oxidoreductase FAD/NAD(P)- binding subunit.
 
 
 0.596
Tbis_2369
PFAM: Acyl transferase; KEGG: eba:ebA5456 acyl-carrier-protein S- malonyltransferase.
 
 0.595
Tbis_1590
PFAM: extracellular solute-binding protein family 1; KEGG: polyamine ABC transporter.
 
     0.580
Tbis_1890
PFAM: sulfatase; KEGG: GNS; glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID); K01137 N- acetylglucosamine-6-sulfatase.
   
 
 0.577
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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