STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1914PFAM: iron permease FTR1; KEGG: pde:Pden_1733 iron permease FTR1. (281 aa)    
Predicted Functional Partners:
Tbis_1915
KEGG: nmc:NMC0012 hypothetical protein.
  
 0.999
Tbis_1916
Dyp-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.988
Tbis_3029
PFAM: extracellular solute-binding protein family 1; KEGG: acr:Acry_0984 extracellular solute-binding protein.
  
  
 0.630
Tbis_1233
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rce:RC1_0315 iron(III) dicitrate transport ATP-binding protein FecE.
   
  
 0.563
Tbis_1621
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_3149 ABC transporter related.
   
  
 0.563
Tbis_3496
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_4058 ABC transporter related.
   
  
 0.563
Tbis_1786
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: hypothetical protein.
   
    0.557
Tbis_0010
KEGG: scl:sce7051 putative periplasmic substrate- binding protein.
   
  
 0.441
Tbis_1231
PFAM: periplasmic binding protein; KEGG: bsu:BSU33180 hypothetical protein.
   
  
 0.441
Tbis_1624
PFAM: periplasmic binding protein; KEGG: bsu:BSU10330 hypothetical protein.
   
  
 0.441
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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