STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1950PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: mxa:MXAN_6638 hypothetical protein. (189 aa)    
Predicted Functional Partners:
Tbis_1949
PFAM: chalcone and stilbene synthase domain protein; FAE1/Type III polyketide synthase-like protein; 3- Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: ade:Adeh_0387 chalcone/stilbene synthase-like.
 
  
 0.981
Tbis_0279
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; tryptophan halogenase; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: pna:Pnap_1343 geranylgeranyl reductase.
  
  
 0.595
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.