STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1960Transcriptional regulator. (75 aa)    
Predicted Functional Partners:
Tbis_2095
PFAM: sporulation and cell division protein SsgA.
  
     0.712
Tbis_1350
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pzu:PHZ_c2067 transcriptional regulator, Cro/CI family.
  
     0.692
Tbis_0461
Hypothetical protein.
  
     0.663
Tbis_1961
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce6041 ABC transporter, ATP-binding protein.
  
    0.662
Tbis_0587
PFAM: protein of unknown function DUF1707.
  
     0.649
Tbis_0455
Hypothetical protein; KEGG: methyl-accepting chemotaxis sensory transducer with cache sensor.
  
     0.647
Tbis_3345
Hypothetical protein.
  
     0.564
Tbis_1943
KEGG: ccs:CCNA_02915 microcin-processing peptidase 1 (PmbA).
  
     0.560
Tbis_1062
PFAM: protein of unknown function DUF503; KEGG: bcr:BCAH187_A3859 hypothetical protein.
  
     0.512
Tbis_2707
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:RL4642 putative glyoxalase protein.
  
     0.465
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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