STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2086PFAM: lipase class 2; KEGG: bsu:BSU08350 esterase. (225 aa)    
Predicted Functional Partners:
Tbis_2127
TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; KEGG: maq:Maqu_3067 hypothetical protein; Belongs to the long-chain O-acyltransferase family.
  
 
 0.935
Tbis_1821
PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: afw:Anae109_1339 diacylglycerol kinase catalytic region.
     
 0.907
Tbis_1305
PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_2959 putative long-chain-fatty-acid-- CoA ligase.
   
 
 0.825
Tbis_1953
PFAM: AMP-dependent synthetase and ligase; KEGG: psa:PST_0623 AMP-dependent synthetase and ligase.
   
 
 0.825
Tbis_1905
PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_0848 AMP-dependent synthetase and ligase.
     
  0.800
Tbis_2032
PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_0558 AMP-dependent synthetase and ligase.
     
  0.800
Tbis_2432
PFAM: AMP-dependent synthetase and ligase; KEGG: spe:Spro_2474 AMP-dependent synthetase and ligase.
     
  0.800
Tbis_2867
PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_0928 AMP-dependent synthetase and ligase.
     
  0.800
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: mca:MCA2247 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.693
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.691
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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