STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2139PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase. (474 aa)    
Predicted Functional Partners:
Tbis_0350
KEGG: scl:sce6752 hypothetical protein.
 
 
 0.876
Tbis_2318
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: pzu:PHZ_c2480 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
  
 0.875
Tbis_0437
Endo-1,4-beta-xylanase; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; PFAM: glycoside hydrolase family 11; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
   
 0.848
Tbis_0819
Pectate lyase; KEGG: hypothetical protein; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin.
 
 
 0.807
Tbis_2773
KEGG: scl:sce2212 putative topoisomerase.
 
     0.805
Tbis_3482
PFAM: lipolytic protein G-D-S-L family; KEGG: lysophospholipase L1 and related esterases.
 
 
 0.795
Tbis_2319
PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.730
Tbis_2328
PFAM: lipolytic protein G-D-S-L family; KEGG: pzu:PHZ_c2471 lysophospholipase L1.
 
 
 0.729
Tbis_0447
PFAM: Pectinesterase; KEGG: cja:CJA_0181 pectin methylesterase, putative, pme8C.
  
   
 0.713
Tbis_2412
PFAM: glycoside hydrolase family 3 domain protein; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: bha:BH1908 glucan 1,4-beta-glucosidase.
 
   
 0.704
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.