STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2329TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpi:Rpic_3122 phosphoglycolate phosphatase. (217 aa)    
Predicted Functional Partners:
Tbis_2330
KEGG: hrpA; ATP-dependent RNA helicase HrpA; K03578 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase.
       0.538
Tbis_0975
PFAM: Roadblock/LC7 family protein; KEGG: pna:Pnap_2813 roadblock/LC7 family protein.
  
     0.472
Tbis_3254
PFAM: Roadblock/LC7 family protein; KEGG: pna:Pnap_2813 roadblock/LC7 family protein.
  
     0.463
Tbis_0155
PFAM: Roadblock/LC7 family protein; KEGG: lch:Lcho_0658 roadblock/LC7 family protein.
  
     0.458
Tbis_0976
PFAM: protein of unknown function DUF742.
  
     0.452
Tbis_0971
PFAM: Roadblock/LC7 family protein; KEGG: pna:Pnap_2813 roadblock/LC7 family protein.
  
     0.445
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.434
Tbis_3057
SMART: AAA ATPase; KEGG: bcz:pE33L466_0231 hypothetical protein.
  
     0.423
Tbis_0972
PFAM: protein of unknown function DUF742.
  
     0.413
Tbis_0970
PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: hypothetical protein.
  
     0.408
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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