STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2343PFAM: aminoglycoside phosphotransferase; KEGG: mxa:MXAN_0104 aminoglycoside phosphotransferase family protein. (294 aa)    
Predicted Functional Partners:
Tbis_2342
KEGG: hypothetical protein.
       0.773
Tbis_2319
PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.535
Tbis_2409
KEGG: SL44-1; basic proline-rich protein.
  
     0.527
Tbis_2341
KEGG: hypothetical protein.
       0.501
Tbis_0158
KEGG: bat:BAS2719 hypothetical protein.
  
     0.465
Tbis_1021
PFAM: Carbohydrate-binding CenC domain protein; KEGG: bcj:BCAL1722 putative exported chitinase.
  
     0.442
Tbis_1083
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: hypothetical protein; K01706 glucarate dehydratase.
  
     0.400
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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