STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2661PFAM: aminoglycoside phosphotransferase; KEGG: smt:Smal_1721 aminoglycoside phosphotransferase. (303 aa)    
Predicted Functional Partners:
Tbis_2662
Hypothetical protein.
       0.773
Tbis_2894
PFAM: proteinase inhibitor I16 subtilisin-type inhibitor; KEGG: eca:ECA0358 biopolymer transport protein; Belongs to the protease inhibitor I16 (SSI) family.
  
     0.726
Tbis_3002
Hypothetical protein; KEGG: COL1A1; collagen, type I, alpha 1; K06236 collagen, type I/II/III/V/XI, alpha.
 
     0.715
Tbis_3213
KEGG: pin:Ping_0970 hypothetical protein.
 
    0.647
Tbis_3164
KEGG: sfu:Sfum_3153 hypothetical protein.
  
     0.646
Tbis_0875
Hypothetical protein; KEGG: ank:AnaeK_2878 asparagine synthase.
 
     0.642
Tbis_3401
KEGG: mxa:MXAN_5370 putative lipoprotein.
  
     0.635
Tbis_2897
KEGG: sfu:Sfum_3153 hypothetical protein.
  
     0.618
Tbis_0772
Hypothetical protein.
  
    0.613
Tbis_2282
PFAM: protein of unknown function DUF1486; KEGG: hne:HNE_2994 hypothetical protein.
  
     0.611
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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