STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2682TIGRFAM: L-lysine 6-transaminase; PFAM: aminotransferase class-III; KEGG: pca:Pcar_2442 L-lysine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (424 aa)    
Predicted Functional Partners:
Tbis_1510
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ade:Adeh_0831 delta-1-pyrroline-5-carboxylate dehydrogenase.
 
 
 0.498
Tbis_2176
PFAM: Aldehyde Dehydrogenase; KEGG: gur:Gura_3314 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.459
Tbis_1873
PFAM: Pyridoxal-dependent decarboxylase; aminotransferase class V; Soluble liver antigen/liver pancreas antigen; KEGG: dal:Dalk_0154 pyridoxal-dependent decarboxylase.
  
 
 0.401
Tbis_1813
PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: scl:sce5626 leucine responsive regulatory protein.
 
   
 0.400
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.