STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2835TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: rme:Rmet_4013 protocatechuate 3,4- dioxygenase, beta subunit. (258 aa)    
Predicted Functional Partners:
Tbis_2834
TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: xca:xccb100_0394 protocatechuate 3,4- dioxygenase alpha chain.
 
 
0.998
Tbis_2833
TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: reh:H16_B2289 3-carboxy-cis,cis-muconate cyclo-isomerase.
 
 
 0.997
Tbis_2831
4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding; KEGG: sus:Acid_0252 4-hydroxybenzoate 3- monooxygenase.
 
 
 0.995
Tbis_2832
TIGRFAM: 3-oxoadipate enol-lactonase; 4- carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; alpha/beta hydrolase fold; KEGG: reh:H16_B2288 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
 
  
 0.962
Tbis_2836
PFAM: coenzyme A transferase; KEGG: pfo:Pfl01_1268 coenzyme A transferase.
 
  
 0.804
Tbis_2837
3-oxoadipate CoA-transferase; PFAM: coenzyme A transferase; KEGG: pfl:PFL_1317 3-oxoadipate:succinyl-CoA transferase, A subunit.
 
  
 0.721
Tbis_2838
KEGG: reu:Reut_B5569 IclR family transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
 
  
 0.620
Tbis_0140
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: bam:Bamb_4089 oxidoreductase FAD/NAD(P)- binding subunit.
 
  
 0.520
Tbis_1111
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; cytochrome P450; KEGG: reh:H16_B1279 two domain protein: cytochrome P450.
 
  
 0.512
Tbis_1611
PFAM: amidohydrolase 2; KEGG: rpe:RPE_4121 amidohydrolase 2.
  
     0.419
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.