STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2994Hypothetical protein. (76 aa)    
Predicted Functional Partners:
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.660
Tbis_0829
KEGG: scl:sce6304 hypothetical protein.
  
     0.614
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.561
Tbis_1984
KEGG: sus:Acid_5280 glucose-6-P dehydrogenase subunit-like protein.
  
     0.550
Tbis_0005
PFAM: protein of unknown function DUF721; KEGG: gsu:GSU0638 hypothetical protein.
  
     0.544
Tbis_1263
PFAM: RDD domain containing protein; KEGG: ppw:PputW619_4234 RDD domain-containing protein.
  
     0.537
Tbis_2993
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 transcriptional regulator, TetR family.
       0.532
Tbis_2368
Putative transcriptional regulator, PucR family; KEGG: reu:Reut_B5661 CdaR family transcriptional regulator.
  
     0.521
Tbis_0765
Superfamily I DNA and RNA helicase-like protein; KEGG: bca:BCE_2839 UvrD/Rep helicase family protein.
  
     0.487
Tbis_1144
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: gur:Gura_3132 DNA polymerase III, delta subunit.
  
     0.481
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.