STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_3003PFAM: Abortive infection protein; KEGG: bsu:BSU40830 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Tbis_3002
Hypothetical protein; KEGG: COL1A1; collagen, type I, alpha 1; K06236 collagen, type I/II/III/V/XI, alpha.
 
     0.567
Tbis_0484
Hypothetical protein; KEGG: swi:Swit_4521 membrane-like protein.
 
     0.490
Tbis_2150
PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_5401 GCN5-related N- acetyltransferase.
  
     0.485
Tbis_2631
Hypothetical protein; KEGG: rpc:RPC_1184 ATPase.
  
     0.474
Tbis_1181
PFAM: Antibiotic biosynthesis monooxygenase.
  
     0.472
Tbis_2764
KEGG: hypothetical protein.
  
     0.466
Tbis_2114
Hypothetical protein.
  
     0.460
Tbis_0554
PFAM: protein of unknown function DUF181; KEGG: acp:A2cp1_3940 TPR repeat-containing protein.
  
  
 0.457
Tbis_0555
PFAM: protein of unknown function DUF181; KEGG: bcy:Bcer98_0958 hypothetical protein.
  
  
 0.457
Tbis_3066
KEGG: hypothetical protein.
  
     0.433
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.