STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_3160KEGG: sfu:Sfum_3153 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Tbis_0875
Hypothetical protein; KEGG: ank:AnaeK_2878 asparagine synthase.
  
     0.769
Tbis_3052
KEGG: similar to hedgehog protein.
 
     0.757
Tbis_2149
KEGG: hypothetical protein.
  
     0.742
Tbis_3033
Hypothetical protein; KEGG: dps:DP2503 RNA polymerase sigma factor (RpoD).
  
     0.741
Tbis_2808
Hypothetical protein; KEGG: sus:Acid_0038 heparinase II/III family protein.
  
     0.729
Tbis_3031
KEGG: Hypothetical protein CBG02561.
  
     0.712
Tbis_1310
Hypothetical protein; KEGG: scl:sce3387 glucosyltransferase-I precursor.
  
     0.708
Tbis_2870
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: hypothetical protein.
  
     0.705
Tbis_3002
Hypothetical protein; KEGG: COL1A1; collagen, type I, alpha 1; K06236 collagen, type I/II/III/V/XI, alpha.
  
     0.705
Tbis_1175
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sfu:Sfum_2920 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.696
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.