STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_3408PFAM: regulatory protein TetR; KEGG: mlo:mlr3851 TetR family transcriptional regulator. (205 aa)    
Predicted Functional Partners:
Tbis_3409
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_4140 methyltransferase type 11.
   
   0.718
Tbis_3410
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: gbm:Gbem_1512 xylose isomerase domain protein TIM barrel.
       0.697
Tbis_3411
PFAM: Methyltransferase type 11; KEGG: met:M446_4310 methyltransferase type 11.
 
 
   0.590
Tbis_3407
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afw:Anae109_0009 hypothetical protein.
       0.475
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.