STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_3523KEGG: bpa:BPP4237 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Tbis_1977
PFAM: cytochrome oxidase assembly; KEGG: acp:A2cp1_0224 cytochrome oxidase assembly.
 
 
 0.799
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.758
Tbis_3521
PFAM: methyltransferase small; KEGG: sus:Acid_0228 methyltransferase small; Belongs to the methyltransferase superfamily.
 
     0.697
Tbis_1289
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: hch:HCH_00047 cytochrome-c oxidase, subunit II.
 
 
 0.659
Tbis_3524
PFAM: amidohydrolase 2; KEGG: cak:Caul_1976 amidohydrolase 2.
 
     0.645
Tbis_1296
PFAM: cytochrome c oxidase subunit III; KEGG: mpo:Mpop_4852 cytochrome o ubiquinol oxidase, subunit III.
 
  
 0.571
Tbis_3522
PFAM: regulatory protein TetR; KEGG: dol:Dole_0457 TetR family transcriptional regulator.
       0.555
Tbis_1290
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.552
Tbis_1901
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.551
Tbis_2149
KEGG: hypothetical protein.
  
     0.536
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.