STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dpep_0048Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: tpd:Teth39_0032 XRE family transcriptional regulator. (148 aa)    
Predicted Functional Partners:
Dpep_0552
PFAM: CinA domain protein; KEGG: plu:plu1248 competence damage-inducible protein A; Belongs to the CinA family.
    
 0.835
Dpep_1872
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: rfe:RF_1394 TPR.
     
 0.702
Dpep_2326
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4144 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
    
 0.572
Dpep_0372
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ckl:CKL_1947 hypothetical protein.
  
     0.422
Dpep_0574
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.402
Your Current Organism:
Dethiosulfovibrio peptidovorans
NCBI taxonomy Id: 469381
Other names: D. peptidovorans DSM 11002, Dethiosulfovibrio peptidovorans DSM 11002, Dethiosulfovibrio peptidovorans str. DSM 11002, Dethiosulfovibrio peptidovorans strain DSM 11002
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