node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dpep_0579 | Dpep_2097 | Dpep_0579 | Dpep_2097 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.911 |
Dpep_0579 | mnmE | Dpep_0579 | Dpep_0587 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.886 |
Dpep_0579 | rplC | Dpep_0579 | Dpep_1936 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.918 |
Dpep_0579 | rplK | Dpep_0579 | Dpep_0447 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.882 |
Dpep_0579 | rplM | Dpep_0579 | Dpep_0456 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.905 |
Dpep_0579 | rplN | Dpep_0579 | Dpep_1946 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.878 |
Dpep_0579 | rplO | Dpep_0579 | Dpep_1955 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.894 |
Dpep_0579 | rplQ | Dpep_0579 | Dpep_1964 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: tcx:Tcr_0320 ribosomal protein L17. | 0.886 |
Dpep_0579 | rplU | Dpep_0579 | Dpep_2146 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.899 |
Dpep_0579 | rsfS | Dpep_0579 | Dpep_2140 | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.898 |
Dpep_2097 | Dpep_0579 | Dpep_2097 | Dpep_0579 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; Belongs to the pseudouridine synthase RluA family. | 0.911 |
Dpep_2097 | mnmE | Dpep_2097 | Dpep_0587 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.925 |
Dpep_2097 | rplC | Dpep_2097 | Dpep_1936 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.918 |
Dpep_2097 | rplK | Dpep_2097 | Dpep_0447 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.937 |
Dpep_2097 | rplM | Dpep_2097 | Dpep_0456 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.924 |
Dpep_2097 | rplN | Dpep_2097 | Dpep_1946 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.885 |
Dpep_2097 | rplO | Dpep_2097 | Dpep_1955 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.895 |
Dpep_2097 | rplQ | Dpep_2097 | Dpep_1964 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: tcx:Tcr_0320 ribosomal protein L17. | 0.896 |
Dpep_2097 | rplU | Dpep_2097 | Dpep_2146 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.897 |
Dpep_2097 | rsfS | Dpep_2097 | Dpep_2140 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.901 |