STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ66124.1Uncharacterized conserved protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. (171 aa)    
Predicted Functional Partners:
ADQ66125.1
Predicted GTPase; PFAM: Nucleolar GTP-binding protein 1 (NOG1); TIGRFAM: small GTP-binding protein domain.
 
    0.807
ADQ66123.1
NTF2 domain-containing protein; PFAM: Nuclear transport factor 2 (NTF2) domain.
       0.680
ADQ66162.1
Predicted nucleic acid-binding protein with PIN domain and Zn ribbon.
  
  
 0.620
eif6
Translation initiation factor 6 (aeIF-6); Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
    0.602
rpl22p
LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
    0.599
ADQ67876.1
PFAM: GTPase of unknown function; TGS domain; TIGRFAM: small GTP-binding protein domain.
  
    0.585
ADQ68244.1
Uncharacterized Zn-finger protein.
  
    0.582
rpl40e
PFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family.
 
    0.564
ADQ68194.1
Serine/threonine protein kinase; PFAM: RIO1 family; Rio2, N-terminal.
  
    0.559
ADQ67114.1
rRNA biogenesis protein Nop56/Nop58; PFAM: Putative snoRNA binding domain.
  
    0.550
Your Current Organism:
Halogeometricum borinquense
NCBI taxonomy Id: 469382
Other names: H. borinquense DSM 11551, Halogeometricum borinquense ATCC 700274, Halogeometricum borinquense DSM 11551, Halogeometricum borinquense JCM 10706, Halogeometricum borinquense PR 3, Halogeometricum borinquense str. DSM 11551, Halogeometricum borinquense strain DSM 11551
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.