STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ66348.1PFAM: Bacterial regulatory proteins, tetR family. (209 aa)    
Predicted Functional Partners:
ADQ66349.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
     
 0.795
rad25
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
     
 0.601
ADQ68221.1
Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix; Response regulator receiver domain.
   
  
 0.589
ADQ67718.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
   
 
 0.559
ADQ66347.1
Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase.
     
 0.558
ADQ67717.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
     
 0.515
ADQ67499.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
  
  
 0.500
ADQ68105.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
      
 0.495
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
 
   
 0.471
ADQ67414.1
Hypothetical protein.
     
 0.463
Your Current Organism:
Halogeometricum borinquense
NCBI taxonomy Id: 469382
Other names: H. borinquense DSM 11551, Halogeometricum borinquense ATCC 700274, Halogeometricum borinquense DSM 11551, Halogeometricum borinquense JCM 10706, Halogeometricum borinquense PR 3, Halogeometricum borinquense str. DSM 11551, Halogeometricum borinquense strain DSM 11551
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.