Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ66400.1PFAM: Uncharacterized protein conserved in archaea (DUF2240). (148 aa)    
Predicted Functional Partners:
ADQ66399.1
Hypothetical protein.
       0.920
rps8e
PFAM: Ribosomal protein S8e; TIGRFAM: ribosomal protein S8.e.
       0.918
ADQ68423.1
Uncharacterized conserved protein.
  
     0.712
ADQ66567.1
Signal peptidase I.
  
     0.705
atpF
Archaeal/vacuolar-type H+-ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.696
ADQ67093.1
Uncharacterized conserved protein; PFAM: PRC-barrel domain.
  
     0.678
ADQ67465.1
Uncharacterized conserved protein.
  
     0.678
ADQ68422.1
OB-fold nucleic acid binding protein.
  
     0.678
ADQ68401.1
PFAM: ATP synthase subunit C.
  
     0.672
ADQ65823.1
Hypothetical protein; TIGRFAM: signal peptidase I, archaeal type.
  
     0.669
Your Current Organism:
Halogeometricum borinquense
NCBI taxonomy Id: 469382
Other names: H. borinquense DSM 11551, Halogeometricum borinquense ATCC 700274, Halogeometricum borinquense DSM 11551, Halogeometricum borinquense JCM 10706, Halogeometricum borinquense PR 3, Halogeometricum borinquense str. DSM 11551, Halogeometricum borinquense strain DSM 11551
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