STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ67485.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
ADQ66879.1
Site-specific recombinase XerD; PFAM: Phage integrase family.
  
     0.658
ADQ66301.1
Hypothetical protein.
  
     0.569
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.544
ADQ67099.1
PFAM: Uncharacterized conserved protein (DUF2048).
  
     0.529
ADQ68471.1
Site-specific recombinase XerD; PFAM: Phage integrase family.
  
     0.526
ADQ66834.1
Hypothetical protein.
  
     0.504
ADQ67619.1
PFAM: HTH DNA binding domain.
  
     0.486
ADQ68331.1
PFAM: LVIVD repeat.
  
     0.471
ADQ67537.1
PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain.
  
     0.469
ADQ67597.1
Archaeal flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
  
     0.469
Your Current Organism:
Halogeometricum borinquense
NCBI taxonomy Id: 469382
Other names: H. borinquense DSM 11551, Halogeometricum borinquense ATCC 700274, Halogeometricum borinquense DSM 11551, Halogeometricum borinquense JCM 10706, Halogeometricum borinquense PR 3, Halogeometricum borinquense str. DSM 11551, Halogeometricum borinquense strain DSM 11551
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.