Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ67544.1Predicted membrane protein; PFAM: EamA-like transporter family. (141 aa)    
Predicted Functional Partners:
ADQ67545.1
Peroxiredoxin; PFAM: AhpC/TSA family.
       0.678
ADQ68197.1
Hypothetical protein.
 
     0.645
ADQ66879.1
Site-specific recombinase XerD; PFAM: Phage integrase family.
  
     0.625
ADQ66717.1
PFAM: HTH DNA binding domain.
  
     0.573
ADQ67619.1
PFAM: HTH DNA binding domain.
  
     0.572
ADQ67491.1
Predicted ATPase; PFAM: Domain of unknown function DUF87.
  
    0.566
ADQ67071.1
Glycosyl hydrolase, glucoamylase; PFAM: Glycosyl hydrolases family 15; Glucodextranase, domain N; TIGRFAM: glucan 1,4-alpha-glucosidase.
 
     0.529
ADQ68195.1
PFAM: Sugar-specific transcriptional regulator TrmB; Archaeal transcriptional regulator TrmB.
  
     0.519
ADQ67045.1
ORC complex protein Cdc6/Orc1; Involved in regulation of DNA replication.
  
     0.512
ADQ66880.1
Site-specific recombinase XerD; PFAM: Phage integrase family.
  
     0.503
Your Current Organism:
Halogeometricum borinquense
NCBI taxonomy Id: 469382
Other names: H. borinquense DSM 11551, Halogeometricum borinquense ATCC 700274, Halogeometricum borinquense DSM 11551, Halogeometricum borinquense JCM 10706, Halogeometricum borinquense PR 3, Halogeometricum borinquense str. DSM 11551, Halogeometricum borinquense strain DSM 11551
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