STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_0857Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mxa:MXAN_5410 ECF subfamily RNA polymerase sigma factor. (407 aa)    
Predicted Functional Partners:
Cwoe_0858
KEGG: scl:sce5148 hypothetical protein.
 
     0.920
Cwoe_2507
PFAM: YCII-related; KEGG: mxa:MXAN_0680 DGPF domain-containing protein.
 
     0.780
Cwoe_2629
PFAM: YCII-related; KEGG: bja:bll6613 hypothetical protein.
 
     0.780
Cwoe_3323
PFAM: YCII-related; KEGG: bra:BRADO5671 hypothetical protein.
 
     0.779
Cwoe_1406
PFAM: YCII-related; KEGG: cja:CJA_3028 DGPF domain superfamily.
 
     0.778
Cwoe_0472
PFAM: YCII-related; KEGG: bja:bll6613 hypothetical protein.
 
     0.772
Cwoe_0382
PFAM: YCII-related; KEGG: mxa:MXAN_0680 DGPF domain-containing protein.
 
     0.762
Cwoe_2464
PFAM: YCII-related; KEGG: mxa:MXAN_0680 DGPF domain-containing protein.
     0.747
Cwoe_0349
PFAM: YCII-related; KEGG: mlo:mlr2587 hypothetical protein.
 
     0.745
Cwoe_5551
PFAM: YCII-related; KEGG: bpy:Bphyt_4212 DGPFAETKE family protein.
 
     0.573
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.