STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_1027PFAM: protein of unknown function DUF718; KEGG: msu:MS2324 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Cwoe_4812
PFAM: Carbohydrate kinase, FGGY-like; KEGG: pct:PC1_0420 rhamnulokinase.
 
  
 0.914
Cwoe_4810
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: avi:Avi_6264 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.859
Cwoe_4811
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: smd:Smed_0222 L-rhamnose catabolism isomerase.
 
   
 0.837
Cwoe_0243
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: alfa-L-rhamnosidase.
 
  
 0.775
xylB
TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; KEGG: pfs:PFLU2740 xylulose kinase.
 
  
 0.713
Cwoe_2952
PFAM: major facilitator superfamily MFS_1; KEGG: pct:PC1_1109 major facilitator superfamily MFS_1.
 
  
 0.704
Cwoe_4813
L-fucose isomerase-like protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.701
Cwoe_1026
PFAM: oxidoreductase domain protein; KEGG: sme:SM_b21355 putative oxidoreductase protein.
 
    0.680
Cwoe_4418
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.
 
     0.655
Cwoe_0563
PFAM: amidohydrolase 2; KEGG: bbt:BBta_3275 hypothetical protein.
 
  
 0.633
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.