STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_1304PFAM: CoA-binding domain protein; GCN5-related N- acetyltransferase; KEGG: dal:Dalk_1024 acetyl coenzyme A synthetase (ADP forming), alpha domain protein. (904 aa)    
Predicted Functional Partners:
Cwoe_4712
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: afw:Anae109_1891 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
 
 0.622
Cwoe_1307
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bam:Bamb_2165 protein tyrosine phosphatase.
     
 0.584
Cwoe_5226
PFAM: Transcription regulator, AsnC-type-like; KEGG: dps:DP0751 transcription regulator.
 
     0.574
Cwoe_2777
PFAM: histone deacetylase superfamily; KEGG: bpr:GBP346_A0044 histone deacetylase family protein.
 
     0.569
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.562
Cwoe_1305
PFAM: sulfatase; KEGG: dde:Dde_0462 sulfatase, putative.
       0.550
Cwoe_1306
PFAM: sulfatase; KEGG: hypothetical protein; K01137 N- acetylglucosamine-6-sulfatase.
       0.550
Cwoe_1308
PFAM: Fructosamine/Ketosamine-3-kinase; aminoglycoside phosphotransferase; KEGG: tbd:Tbd_0148 hypothetical protein.
       0.550
Cwoe_1860
PFAM: histone deacetylase superfamily; KEGG: scl:sce6159 histone deacetylase family protein.
 
     0.527
Cwoe_5611
Indolepyruvate ferredoxin oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dar:Daro_2777 2-oxoacid ferredoxin oxidoreductase.
 
 
 
 0.526
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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