Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cwoe_0754 | Cwoe_1560 | Cwoe_0754 | Cwoe_1560 | KEGG: ade:Adeh_4091 hypothetical protein. | KEGG: rlg:Rleg_6340 hypothetical protein. | 0.521 |
Cwoe_0754 | Cwoe_2964 | Cwoe_0754 | Cwoe_2964 | KEGG: ade:Adeh_4091 hypothetical protein. | PFAM: membrane protein of unknown function; KEGG: mxa:MXAN_5009 type I phosphodiesterase/nucleotide pyrophosphatase family protein. | 0.466 |
Cwoe_1558 | Cwoe_1559 | Cwoe_1558 | Cwoe_1559 | PFAM: NUDIX hydrolase; KEGG: bja:bll5330 hypothetical protein. | PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sun:SUN_1757 rubredoxin. | 0.600 |
Cwoe_1558 | Cwoe_1560 | Cwoe_1558 | Cwoe_1560 | PFAM: NUDIX hydrolase; KEGG: bja:bll5330 hypothetical protein. | KEGG: rlg:Rleg_6340 hypothetical protein. | 0.433 |
Cwoe_1559 | Cwoe_1558 | Cwoe_1559 | Cwoe_1558 | PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sun:SUN_1757 rubredoxin. | PFAM: NUDIX hydrolase; KEGG: bja:bll5330 hypothetical protein. | 0.600 |
Cwoe_1559 | Cwoe_1560 | Cwoe_1559 | Cwoe_1560 | PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sun:SUN_1757 rubredoxin. | KEGG: rlg:Rleg_6340 hypothetical protein. | 0.576 |
Cwoe_1559 | Cwoe_1561 | Cwoe_1559 | Cwoe_1561 | PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sun:SUN_1757 rubredoxin. | PFAM: Spermine synthase; KEGG: mxa:MXAN_6344 hypothetical protein. | 0.513 |
Cwoe_1560 | Cwoe_0754 | Cwoe_1560 | Cwoe_0754 | KEGG: rlg:Rleg_6340 hypothetical protein. | KEGG: ade:Adeh_4091 hypothetical protein. | 0.521 |
Cwoe_1560 | Cwoe_1558 | Cwoe_1560 | Cwoe_1558 | KEGG: rlg:Rleg_6340 hypothetical protein. | PFAM: NUDIX hydrolase; KEGG: bja:bll5330 hypothetical protein. | 0.433 |
Cwoe_1560 | Cwoe_1559 | Cwoe_1560 | Cwoe_1559 | KEGG: rlg:Rleg_6340 hypothetical protein. | PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sun:SUN_1757 rubredoxin. | 0.576 |
Cwoe_1560 | Cwoe_1561 | Cwoe_1560 | Cwoe_1561 | KEGG: rlg:Rleg_6340 hypothetical protein. | PFAM: Spermine synthase; KEGG: mxa:MXAN_6344 hypothetical protein. | 0.732 |
Cwoe_1560 | Cwoe_2964 | Cwoe_1560 | Cwoe_2964 | KEGG: rlg:Rleg_6340 hypothetical protein. | PFAM: membrane protein of unknown function; KEGG: mxa:MXAN_5009 type I phosphodiesterase/nucleotide pyrophosphatase family protein. | 0.440 |
Cwoe_1560 | Cwoe_5036 | Cwoe_1560 | Cwoe_5036 | KEGG: rlg:Rleg_6340 hypothetical protein. | TIGRFAM: HhH-GPD family protein; PFAM: HhH-GPD family protein. | 0.528 |
Cwoe_1560 | Cwoe_5248 | Cwoe_1560 | Cwoe_5248 | KEGG: rlg:Rleg_6340 hypothetical protein. | Hypothetical protein. | 0.485 |
Cwoe_1560 | recB | Cwoe_1560 | Cwoe_3373 | KEGG: rlg:Rleg_6340 hypothetical protein. | Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...] | 0.663 |
Cwoe_1560 | recC | Cwoe_1560 | Cwoe_3372 | KEGG: rlg:Rleg_6340 hypothetical protein. | Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] | 0.597 |
Cwoe_1560 | recD | Cwoe_1560 | Cwoe_3374 | KEGG: rlg:Rleg_6340 hypothetical protein. | Exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] | 0.498 |
Cwoe_1561 | Cwoe_1559 | Cwoe_1561 | Cwoe_1559 | PFAM: Spermine synthase; KEGG: mxa:MXAN_6344 hypothetical protein. | PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sun:SUN_1757 rubredoxin. | 0.513 |
Cwoe_1561 | Cwoe_1560 | Cwoe_1561 | Cwoe_1560 | PFAM: Spermine synthase; KEGG: mxa:MXAN_6344 hypothetical protein. | KEGG: rlg:Rleg_6340 hypothetical protein. | 0.732 |
Cwoe_2964 | Cwoe_0754 | Cwoe_2964 | Cwoe_0754 | PFAM: membrane protein of unknown function; KEGG: mxa:MXAN_5009 type I phosphodiesterase/nucleotide pyrophosphatase family protein. | KEGG: ade:Adeh_4091 hypothetical protein. | 0.466 |
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