STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_2068TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 3 domain protein; sigma- 70 region 4 domain protein; KEGG: maq:Maqu_0150 RNA polymerase, sigma 32 subunit, RpoH. (261 aa)    
Predicted Functional Partners:
Cwoe_4563
PFAM: ATP-binding region ATPase domain protein; KEGG: sfu:Sfum_2452 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.717
Cwoe_0036
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: gsu:GSU0408 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
  
 
 0.673
Cwoe_3136
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein; KEGG: ank:AnaeK_2678 CheA signal transduction histidine kinase.
  
  
 0.668
Cwoe_0035
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
 
 0.664
Cwoe_0063
CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: tgr:Tgr7_1329 flagellar motor switch protein FliN.
  
  
 0.657
Cwoe_0048
PFAM: flagellar hook capping protein; KEGG: sat:SYN_02840 flagellar hook capping protein.
  
  
 0.641
Cwoe_0062
PFAM: surface presentation of antigens (SPOA) protein; KEGG: nam:NAMH_1346 flagellar motor switch protein FliM.
  
 
 0.641
Cwoe_4484
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: ret:RHE_CH02539 putative two-component sensor histidine kinase/response regulator hybrid protein.
 
 
 0.638
Cwoe_0022
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ppd:Ppro_3455 flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.
  
  
 0.637
Cwoe_3492
Hypothetical protein.
    
 
 0.636
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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