STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_2438SMART: Helix-turn-helix, AraC domain; KEGG: aha:AHA_3992 DNA gyrase inhibitor. (362 aa)    
Predicted Functional Partners:
Cwoe_2439
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: tgr:Tgr7_1947 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
       0.567
Cwoe_2440
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: pmy:Pmen_0842 cupin 2 domain-containing protein.
  
 
 0.563
Cwoe_3758
Cell division septal protein-like protein; Essential cell division protein.
  
     0.545
Cwoe_2561
KEGG: mxa:MXAN_7423 hypothetical protein.
  
     0.478
Cwoe_1670
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; regulatory protein MerR; KEGG: afw:Anae109_3652 putative adenylate/guanylate cyclase.
  
 
 0.450
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.441
Cwoe_1418
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mms:mma_1576 D-alanyl-D-alanine carboxypeptidase.
  
     0.441
Cwoe_2441
PFAM: MOSC domain containing protein; KEGG: xop:PXO_00092 MOSC domain protein.
       0.440
Cwoe_3783
KEGG: mlo:mlr6918 hypothetical protein.
  
     0.434
Cwoe_2517
KEGG: rfr:Rfer_2516 hypothetical protein.
 
     0.404
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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