STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_2459PFAM: Collagen triple helix repeat; KEGG: COL1A2; collagen, type I, alpha 2; K06236 collagen, type I/II/III/V/XI, alpha. (342 aa)    
Predicted Functional Partners:
Cwoe_5054
PFAM: Collagen triple helix repeat; KEGG: COLP1alpha; alpha-1 collagen; K06236 collagen, type I/II/III/V/XI, alpha.
 
     0.838
Cwoe_0939
PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0585 hypothetical protein.
  
     0.771
Cwoe_3949
PFAM: Collagen triple helix repeat; KEGG: COL1A2; collagen, type I, alpha 2; K06236 collagen, type I/II/III/V/XI, alpha.
  
     0.766
Cwoe_2225
PFAM: low-density lipoprotein receptor YWTD repeat; SMART: low-density lipoprotein receptor YWTD repeat; KEGG: scl:sce0136 hypothetical protein.
  
     0.586
Cwoe_5052
PFAM: glycosyl transferase family 2; KEGG: aav:Aave_1288 glycosyl transferase family protein.
  
     0.534
Cwoe_2458
Diguanylate cyclase; KEGG: dma:DMR_31090 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
       0.514
Cwoe_3360
PFAM: low-density lipoprotein receptor YWTD repeat; SMART: low-density lipoprotein receptor YWTD repeat; KEGG: gbm:Gbem_2066 multicopper oxidase type 2.
  
     0.506
Cwoe_4578
PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical protein.
 
    
0.476
Cwoe_3241
PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: dvm:DvMF_0371 cell divisionFtsK/SpoIIIE.
   
 
 0.400
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.