STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_2777PFAM: histone deacetylase superfamily; KEGG: bpr:GBP346_A0044 histone deacetylase family protein. (368 aa)    
Predicted Functional Partners:
Cwoe_4822
PFAM: helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce2503 Snf2/Rad54 family helicase.
   
 0.785
Cwoe_2775
TIGRFAM: urea carboxylase-associated protein 1; PFAM: Domain of unknown function DUF1989; KEGG: scl:sce4914 hypothetical protein.
       0.773
Cwoe_2776
TIGRFAM: urea carboxylase-associated protein 2; PFAM: Domain of unknown function DUF1989; KEGG: scl:sce4913 hypothetical protein.
       0.773
Cwoe_3361
PFAM: ubiquitin; SMART: ubiquitin; KEGG: RPS27A; ribosomal protein S27a; K02977 small subunit ribosomal protein S27Ae.
  
 0.723
Cwoe_4888
KEGG: mei:Msip34_0093 hypothetical protein.
    
 0.710
Cwoe_0883
PFAM: Ankyrin; SMART: Ankyrin; KEGG: ANK25; hypothetical protein.
   
 0.654
Cwoe_2065
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pfo:Pfl01_2742 twin-arginine translocation pathway signal.
   
 0.650
Cwoe_2268
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: reh:H16_A0856 L-amino-acid oxidase.
   
 0.650
Cwoe_3628
PFAM: amine oxidase; KEGG: hypothetical protein; K00274 monoamine oxidase.
   
 0.650
Cwoe_4445
PFAM: amine oxidase; KEGG: mxa:MXAN_4930 amine oxidase, flavin- containing.
   
 0.650
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.