STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_3092PFAM: protein of unknown function DUF661; KEGG: rhi:NGR_c07100 hypothetical protein. (114 aa)    
Predicted Functional Partners:
Cwoe_1479
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mxa:MXAN_5618 Aha1 domain-containing protein.
 
     0.617
Cwoe_3093
KEGG: afw:Anae109_3237 hypothetical protein.
       0.562
Cwoe_3095
PFAM: DNA alkylation repair enzyme; KEGG: cvi:CV_0164 DNA alkylation repair enzyme.
 
     0.557
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.458
Cwoe_5582
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: sme:SMc01715 hypothetical protein.
  
     0.458
Cwoe_0229
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bxe:Bxe_B0860 XRE family transcriptional regulator.
  
     0.440
Cwoe_0468
Hypothetical protein; KEGG: lpn:lpg1627 putative secreted protein.
  
     0.432
Cwoe_1706
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mlo:mll4526 transcriptional regulatory.
  
     0.427
Cwoe_5652
Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: scl:sce6697 putative transcriptional regulator.
  
     0.424
Cwoe_3046
KEGG: lpp:lpp2367 hypothetical protein.
  
     0.410
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.