STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_3526PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: cja:CJA_2276 serine/threonine protein kinase. (514 aa)    
Predicted Functional Partners:
Cwoe_3525
PFAM: Polynucleotide adenylyltransferase region; KEGG: dvu:DVU1653 polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.589
Cwoe_3524
PFAM: protein of unknown function DUF152; KEGG: xop:PXO_04872 hypothetical protein.
 
     0.578
Cwoe_3509
PFAM: peptidase M50; KEGG: afw:Anae109_1161 putative membrane-associated zinc metalloprotease.
   
  
 0.565
Cwoe_1989
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pca:Pcar_0090 parvulin-like peptidyl-prolyl isomerase.
   
 
 0.540
Cwoe_5240
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sat:SYN_03141 peptidylprolyl isomerase.
   
 
 0.540
Cwoe_3523
PFAM: alanine racemase domain protein; KEGG: dal:Dalk_0394 alanine racemase domain protein.
       0.522
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.488
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
   
    0.471
hisS
KEGG: hha:Hhal_1788 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
  
    0.452
hisZ
histidyl-tRNA synthetase 2; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.
  
    0.452
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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