STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_3645TIGRFAM: DivIVA domain; KEGG: Axoneme-associated protein GASP-180. (233 aa)    
Predicted Functional Partners:
Cwoe_3649
PFAM: protein of unknown function DUF214; KEGG: hha:Hhal_1416 hypothetical protein.
  
    0.560
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.556
Cwoe_3647
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lhk:LHK_01829 LolD.
  
  
 0.544
Cwoe_3648
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2413 ABC transporter, ATP-binding protein.
  
  
 0.544
Cwoe_3621
PFAM: glycoside hydrolase family 3 domain protein; KEGG: hypothetical protein.
  
  
 0.534
Cwoe_4915
PFAM: glycoside hydrolase family 3 domain protein; KEGG: dma:DMR_25620 putative beta-N- acetylhexosaminidase.
  
  
 0.534
Cwoe_5411
PFAM: glycoside hydrolase family 3 domain protein; KEGG: xac:XAC3869 beta-glucosidase.
  
  
 0.534
Cwoe_3646
PFAM: transcriptional regulator PadR family protein; KEGG: bcm:Bcenmc03_1322 PadR-like family transcriptional regulator.
       0.517
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
  
 0.484
Cwoe_3650
Hypothetical protein; KEGG: sat:SYN_01806 putative cytoplasmic protein.
       0.429
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.