STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_4923PFAM: amino acid permease-associated region; KEGG: pfo:Pfl01_2793 amino acid permease-associated region. (475 aa)    
Predicted Functional Partners:
Cwoe_4922
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: bpy:Bphyt_4731 luciferase-like monooxygenase.
       0.701
Cwoe_4924
KEGG: reu:Reut_A0109 hypothetical protein.
       0.535
Cwoe_5631
PFAM: ABC-2 type transporter; KEGG: aha:AHA_1263 ABC transporter permease protein.
  
     0.486
Cwoe_3155
KEGG: hypothetical protein.
    
 0.483
Cwoe_0883
PFAM: Ankyrin; SMART: Ankyrin; KEGG: ANK25; hypothetical protein.
 
 0.471
Cwoe_2832
PFAM: membrane-flanked domain; KEGG: SNF2 family chromodomain-helicase.
  
     0.470
Cwoe_4926
PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: vei:Veis_4212 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
   
 
 0.422
Cwoe_4925
PFAM: cyclase family protein; KEGG: vap:Vapar_0647 cyclase family protein.
       0.421
Cwoe_5093
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ret:RHE_CH03507 multidrug ABC transporter ATP- binding protein.
  
 
 0.401
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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