STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_5220Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rfr:Rfer_2227 XRE family transcriptional regulator. (960 aa)    
Predicted Functional Partners:
Cwoe_5218
PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical protein.
 
     0.715
Cwoe_5219
Hypothetical protein.
       0.658
Cwoe_4558
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: vap:Vapar_3549 transcriptional regulator, LuxR family.
 
 
0.605
Cwoe_0554
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: vap:Vapar_3549 transcriptional regulator, LuxR family.
 
 
0.601
Cwoe_0303
PFAM: protein of unknown function DUF214; KEGG: hha:Hhal_1416 hypothetical protein.
 
     0.567
Cwoe_1037
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ade:Adeh_2191 LuxR family transcriptional regulator.
 
 
 0.551
Cwoe_0207
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pin:Ping_0445 colicin uptake-like protein.
 
 
 0.547
Cwoe_5221
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: predicted gene, 100039562; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.537
Cwoe_2394
PFAM: regulatory protein TetR; KEGG: mes:Meso_0701 TetR family transcriptional regulator.
  
   
 0.514
Cwoe_5412
Hypothetical protein.
  
     0.511
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.